Identifying contaminants in marker-gene and metagenomics data | Introduction | Necessary Ingredients | Setting up | Inspect Library Sizes | Identify Contaminants - Frequency | Identify Contaminants - Prevalence | Putting It All Together | Conclusion

Introduction | Overview of the dada2 pipeline | Filter and Trim | Dereplicate | Learn the error rates | Infer sample composition | Merge forward/reverse reads | Remove chimeras | A second sample | Create sequence table